PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00070119001
Common NameGSBRNA2T00070119001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 248aa    MW: 26678.4 Da    PI: 8.1184
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00070119001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260964e-304106198
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C+++C ++p++     +++q++++ +++k++G++ +++ll++ p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++
  GSBRNA2T00070119001   4 SCNGCRVLRKGCSENCSIRPCLqwiksAESQANATVFLAKFYGRAGLMNLLSTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNW 93 
                          6*********************9999777889********************************************************** PP

               DUF260  86 qleqlkaelallk 98 
                          +l+q+++e+++++
  GSBRNA2T00070119001  94 HLCQAAVEAVMRG 106
                          *******998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.9273109IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-244104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLSTGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV EAVMRGSPVT PIACDAAVTG  120
QAPPFSNNKL FDIRHVSRDE NAVKSRCRSS RSGACKEGRN VRSSLSHESS LSQESAVVKG  180
EGSMVSSEET TEEPSWIGLE LTLGLEPSGA RGSHVVVPIK KRKLEKSGTC DDDADTCKIE  240
LGLVCSE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.117320.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00070119001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738701e-136AB473870.1 Arabidopsis thaliana ASL37 mRNA for ASYMMETRIC LEAVES2-like 37 protein, complete cds.
GenBankAK2296501e-136AK229650.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL19-73-A22.
GenBankBT0109431e-136BT010943.1 Arabidopsis thaliana At1g67100 gene, complete cds.
GenBankBT0116501e-136BT011650.1 Arabidopsis thaliana At1g67100 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013688081.10.0PREDICTED: LOB domain-containing protein 40
SwissprotQ9ZW961e-127LBD40_ARATH; LOB domain-containing protein 40
TrEMBLA0A078FI260.0A0A078FI26_BRANA; BnaA02g12850D protein
STRINGAl_scaffold_0002_13371e-130(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152481518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.11e-128LOB domain-containing protein 40
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]